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FINAL EXAM PYTHON FOR GENOMIC DATA 

For John Hopkins University by Coursera

If you haven't yet read the instructions, please exit the exam and read the Final Exam Instructions.

Please run the following data set in the program(s) that you have written: dna2.fasta

If you created your program(s) correctly, you will be able to answer the questions below.

How many records are in the multi-FASTA file?

1 / 1 point
Correct
Question 2

What is the length of the longest sequence in the file?

1 / 1 point
Correct
Question 3

What is the length of the shortest sequence in the file?

1 / 1 point
Correct
Question 4

What is the length of the longest ORF appearing in reading frame 2 of any of the sequences?

1 / 1 point
Correct
Question 5

What is the starting position of the longest ORF in reading frame 3 in any of the sequences? The position should indicate the character number where the ORF begins. For instance, the following ORF:

> sequence1

ATGCCCTAG

starts at position 1.

1 / 1 point
Correct
Question 6

What is the length of the longest ORF appearing in any sequence and in any forward reading frame?

1 / 1 point
Correct
Question 7

What is the length of the longest forward ORF that appears in the sequence with the identifier gi|142022655|gb|EQ086233.1|16?

1 / 1 point
Correct
Question 8

Find the most frequently occurring repeat of length 6 in all sequences. How many times does it occur in all?

1 / 1 point
Correct
Question 9

Find all repeats of length 12 in the input file. Let's use Max to specify the number of copies

of the most frequent repeat of length 12. How many different 12-base sequences

occur Max times?

1 / 1 point
Correct
Question 10

Which one of the following repeats of length 7 has a maximum number of occurrences?

1 / 1 point
Correct
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